Package: hacksig 0.2.0

hacksig: A Tidy Framework to Hack Gene Expression Signatures

A collection of cancer transcriptomics gene signatures as well as a simple and tidy interface to compute single sample enrichment scores either with the original procedure or with three alternatives: the "combined z-score" of Lee et al. (2008) <doi:10.1371/journal.pcbi.1000217>, the "single sample GSEA" of Barbie et al. (2009) <doi:10.1038/nature08460> and the "singscore" of Foroutan et al. (2018) <doi:10.1186/s12859-018-2435-4>. The 'get_sig_info()' function can be used to retrieve information about each signature implemented.

Authors:Andrea Carenzo [aut, cre], Loris De Cecco [aut], Federico Pistore [aut]

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Peer review:

Bug tracker:https://github.com/acare/hacksig/issues

On CRAN:

gene-expression-signaturesgene-set-enrichment

8 exports 19 stars 1.97 score 19 dependencies 13 scripts 247 downloads

Last updated 2 years agofrom:0b199bf66e. Checks:OK: 1 NOTE: 6. Indexed: yes.

Exports:check_sigget_sig_genesget_sig_infohack_cinsarchack_estimatehack_immunophenoscorehack_sigstratify_sig

Dependencies:clicodetoolsdata.tabledigestfansifuturefuture.applyglobalsgluelifecyclelistenvmagrittrparallellypillarpkgconfigrlangtibbleutf8vctrs