Package: hacksig 0.2.0

hacksig: A Tidy Framework to Hack Gene Expression Signatures

A collection of cancer transcriptomics gene signatures as well as a simple and tidy interface to compute single sample enrichment scores either with the original procedure or with three alternatives: the "combined z-score" of Lee et al. (2008) <doi:10.1371/journal.pcbi.1000217>, the "single sample GSEA" of Barbie et al. (2009) <doi:10.1038/nature08460> and the "singscore" of Foroutan et al. (2018) <doi:10.1186/s12859-018-2435-4>. The 'get_sig_info()' function can be used to retrieve information about each signature implemented.

Authors:Andrea Carenzo [aut, cre], Loris De Cecco [aut], Federico Pistore [aut]

hacksig_0.2.0.tar.gz
hacksig_0.2.0.zip(r-4.5)hacksig_0.2.0.zip(r-4.4)hacksig_0.2.0.zip(r-4.3)
hacksig_0.2.0.tgz(r-4.5-any)hacksig_0.2.0.tgz(r-4.4-any)hacksig_0.2.0.tgz(r-4.3-any)
hacksig_0.2.0.tar.gz(r-4.5-noble)hacksig_0.2.0.tar.gz(r-4.4-noble)
hacksig_0.2.0.tgz(r-4.4-emscripten)hacksig_0.2.0.tgz(r-4.3-emscripten)
hacksig.pdf |hacksig.html
hacksig/json (API)
NEWS

# Install 'hacksig' in R:
install.packages('hacksig', repos = c('https://acare.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/acare/hacksig/issues

Pkgdown site:https://acare.github.io

Datasets:

On CRAN:

Conda:

gene-expression-signaturesgene-set-enrichment

4.41 score 19 stars 27 scripts 211 downloads 8 exports 19 dependencies

Last updated 2 years agofrom:0b199bf66e. Checks:1 ERROR, 8 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesFAILMar 28 2025
R-4.5-winWARNINGMar 28 2025
R-4.5-macWARNINGMar 28 2025
R-4.5-linuxWARNINGMar 28 2025
R-4.4-winWARNINGMar 28 2025
R-4.4-macWARNINGMar 28 2025
R-4.4-linuxWARNINGMar 28 2025
R-4.3-winWARNINGMar 28 2025
R-4.3-macWARNINGMar 28 2025

Exports:check_sigget_sig_genesget_sig_infohack_cinsarchack_estimatehack_immunophenoscorehack_sigstratify_sig

Dependencies:clicodetoolsdata.tabledigestfansifuturefuture.applyglobalsgluelifecyclelistenvmagrittrparallellypillarpkgconfigrlangtibbleutf8vctrs